STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (436 aa)    
Predicted Functional Partners:
xylB
D-xylulose kinase.
 
 
 0.972
xylB-3
D-xylulose kinase.
 
 
 0.925
xylB-2
D-xylulose kinase.
 
 
 0.868
GAP41401.1
Sugar kinase of the NBD/HSP70 family.
    
 0.840
GAP41843.1
Predicted dehydrogenase.
    
 0.826
ATC1_1283
Sugar kinase of the NBD/HSP70 family.
    
 0.809
ATC1_12492
Threonine dehydrogenase.
     
 0.765
ATC1_12434
Sugar kinase of the NBD/HSP70 family.
    
 0.762
GAP41480.1
Sugar (pentulose/hexulose) kinase.
  
 
 0.702
ATC1_13725
Sugar (pentulose/hexulose) kinase; Belongs to the FGGY kinase family.
  
 
 0.702
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.