STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12311Protein containing NurA domain. (393 aa)    
Predicted Functional Partners:
ATC1_12309
Archaeal DNA helicase HerA.
 
 
 
 0.921
ATC1_12310
Hypothetical protein.
 
     0.884
ATC1_11376
DNA repair exonuclease SbcCD ATPase subunit.
 
   
 0.798
sbcD
Excinuclease ABC subunit B; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.783
ATC1_1345
Hypothetical protein.
  
     0.730
GAP41428.1
L,D-transpeptidase catalytic domain.
  
     0.714
GAP41436.1
Predicted RNA-binding protein containing a PIN domain.
  
     0.619
ATC1_13817
Protein containing Chlor_Arch_YYY domain.
  
    0.598
ATC1_1173
Stage III sporulation protein SpoIIIAA.
  
     0.591
GAP41182.1
Protein containing LysM domain.
  
     0.585
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.