STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12386ABC-type branched-chain amino acid transport system, periplasmic component. (375 aa)    
Predicted Functional Partners:
ATC1_12388
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.905
ATC1_12387
Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.886
ATC1_12390
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 
  0.871
ATC1_13119
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.864
ATC1_11221
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.862
ATC1_13118
Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.858
ATC1_11138
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
  
  0.857
GAP41475.1
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.855
ATC1_13995
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.853
ATC1_11220
Branched-chain amino acid ABC-type transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
  0.848
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.