STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41081.1Low molecular weight phosphotyrosine protein phosphatase. (169 aa)    
Predicted Functional Partners:
GAP41080.1
Capsular exopolysaccharide family.
 
 
 0.735
GAP41299.1
Tyrosine-protein phosphatase YwqE.
     
 0.631
GAP41068.1
Undecaprenyl-phosphate galactose phosphotransferase, WbaP.
  
 
 0.621
ATC1_1329
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.621
GAP41048.1
NADPH-dependent 2,4-dienoyl-CoA reductase; Belongs to the sulfur carrier protein TusA family.
   
 
 0.611
GAP41317.1
Thioredoxin.
 
 
 0.598
ATC1_12259
Thioredoxin.
 
 
 0.544
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
   
 0.515
truA
tRNA pseudouridine(38-40) synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
 
   0.503
GAP41633.1
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.473
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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