STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41135.1Radical SAM additional 4Fe4S-binding SPASM domain. (455 aa)    
Predicted Functional Partners:
GAP41136.1
Hypothetical protein.
       0.806
GAP41137.1
Hypothetical protein.
       0.732
ATC1_13943
Protein containing PAS domain S-box.
   
 
 0.718
GAP41138.1
Double zinc ribbon.
       0.693
GAP41134.1
Protein containing methyltransferase domain.
 
     0.636
GAP41086.1
Protein containing PAS domain S-box.
  
 
 0.531
ATC1_13163
Protein containing PAS domain S-box.
  
 
 0.531
ATC1_12168
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
     
 0.430
GAP41725.1
DNA polymerase elongation subunit.
  
     0.420
GAP41796.1
Capsule polysaccharide biosynthesis protein.
 
     0.416
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.