STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41283.1ABC-type Fe3+/spermidine/putrescine transport system, ATPase component. (346 aa)    
Predicted Functional Partners:
GAP41282.1
ABC-type Fe3+ transport system, permease component.
 
 0.965
ATC1_13103
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
   
0.904
GAP41242.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
    
0.904
ATC1_11210
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
     
0.899
ATC1_12398
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
     
0.899
ATC1_13687
ABC transporter periplasmic binding protein, thiB subfamily.
 
  
 0.842
ATC1_1114
ABC-type antimicrobial peptide transport system, permease component.
 
 
    0.765
GAP41383.1
Binding-protein-dependent transport system inner membrane component.
 
 
 0.703
GAP41382.1
ABC-type Fe3+ transport system, periplasmic component.
 
 0.695
GAP41127.1
ABC-type multidrug transport system, ATPase component.
 
  
 
0.575
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.