STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41305.1ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component. (333 aa)    
Predicted Functional Partners:
GAP41306.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.971
GAP41307.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 
 0.967
GAP41086.1
Protein containing PAS domain S-box.
    
 0.845
ATC1_13163
Protein containing PAS domain S-box.
    
 0.845
ATC1_13980
Protein containing PAS domain S-box.
    
  0.640
ATC1_11278
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
 
  
 0.553
ATC1_13942
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
  
 
  0.523
ATC1_12132
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
  
 
 0.486
ATC1_12485
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
  
 
 0.486
ATC1_12487
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
  
 
 0.486
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.