STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41405.1Protein containing leucine rich repeat. (654 aa)    
Predicted Functional Partners:
GAP41404.1
Protein containing leucine rich repeat.
 
    
0.832
GAP41064.1
Protein containing tetratricopeptide repeat.
    
 
 0.764
GAP41406.1
Protein containing leucine rich repeat.
 
    
0.604
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.490
ATC1_12168
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
   0.428
ATC1_11131
Hypothetical protein.
   
   0.411
ATC1_11321
Hypothetical protein.
   
   0.411
ATC1_13283
Hypothetical protein.
   
   0.411
ATC1_13284
Hypothetical protein.
   
   0.411
ATC1_1370
Hypothetical protein.
   
   0.411
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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