STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41732.1Riboflavin kinase; Belongs to the ribF family. (308 aa)    
Predicted Functional Partners:
truB
tRNA pseudouridine(55) synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
  
 0.985
cmk
Cytidylate kinase.
 
  
 0.833
ATC1_13270
Haloacid dehalogenase superfamily, subfamily IA, variant 1.
  
 
 0.811
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
   
 0.763
ATC1_11154
CDP-diglyceride synthetase; Belongs to the CDS family.
 
   
 0.603
GAP41734.1
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs.
       0.599
murC
UDP-N-acetylmuramate dehydrogenase; Cell wall formation; Belongs to the MurB family.
 
  
 0.588
ATC1_13942
NAD(P)-dependent iron-only hydrogenase catalytic subunit.
    
 0.547
ATC1_12475
HAD-superfamily hydrolase, subfamily IIB.
   
 0.528
ATC1_1332
HAD-superfamily hydrolase, subfamily IIB.
   
 0.528
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.