STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (494 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 0.993
ATC1_13522
Ribulose kinase.
 
 0.991
GAP41759.1
Ribulose-5-phosphate 5-epimerase.
 
 0.987
ATC1_1321
L-fucose mutarotase/ribose pyranase, RbsD/FucU family.
  
 
 0.725
GAP41763.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.689
GAP41762.1
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
     0.688
GAP41457.1
alpha-L-arabinofuranosidase.
 
 
 0.683
GAP41764.1
ABC-type sugar transport system, ATPase component.
 
    0.679
ATC1_13212
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.677
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.651
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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