STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41788.1Glycosyl transferase family 2. (319 aa)    
Predicted Functional Partners:
GAP41787.1
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase.
 
    0.885
GAP41796.1
Capsule polysaccharide biosynthesis protein.
 
    0.828
GAP41184.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
 
  0.795
ATC1_13254
Capsule polysaccharide biosynthesis protein.
  
    0.791
ATC1_13816
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
    0.783
GAP41182.1
Protein containing LysM domain.
  
     0.773
ATC1_13492
Hypothetical protein.
  
     0.772
GAP41838.1
Hypothetical protein.
  
     0.770
ATC1_13431
Protein containing G5 domain.
  
     0.767
GAP41789.1
Hypothetical protein.
 
 
  0.765
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.