STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41805.1Predicted amidohydrolase YtcJ. (512 aa)    
Predicted Functional Partners:
ATC1_13546
CubicO group peptidase, beta-lactamase class C family.
 
     0.597
GAP41802.1
ABC-type transport system, periplasmic component.
 
     0.550
GAP41801.1
Amidohydrolase.
 
     0.548
GAP41804.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
       0.493
GAP41803.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
       0.486
ATC1_13642
2-hydroxy-3-oxopropionate reductase.
    
  0.439
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.