STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_13183DNA-binding transcriptional activator of the SARP family. (410 aa)    
Predicted Functional Partners:
ATC1_13182
Hypothetical protein.
       0.789
ATC1_13186
Hypothetical protein.
 
     0.787
ATC1_13187
Hypothetical protein.
 
     0.783
ATC1_13184
Transglutaminase-like superfamily.
 
     0.781
ATC1_13185
Type II secretory pathway, component PulF.
 
     0.608
ATC1_13190
Pilus retraction protein PilT.
 
     0.562
ATC1_1124
Hypothetical protein.
  
     0.433
ATC1_1279
Hypothetical protein.
  
     0.421
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.