STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_13492Hypothetical protein. (400 aa)    
Predicted Functional Partners:
GAP41819.1
Protein containing tetratricopeptide repeat.
 
 
 
 0.954
GAP41182.1
Protein containing LysM domain.
 
   
 0.833
GAP41603.1
Protein containing PAS domain S-box.
  
 
  0.830
ATC1_13694
Tfp pilus assembly protein PilF.
  
 
 0.829
ATC1_13431
Protein containing G5 domain.
 
   
 0.795
ATC1_11272
Membrane protein.
 
     0.784
ATC1_13490
NADH-Ubiquinone/plastoquinone (complex I), various chains.
 
     0.783
GAP41838.1
Hypothetical protein.
 
     0.778
GAP41582.1
Beta-lactamase class A.
  
     0.775
GAP41796.1
Capsule polysaccharide biosynthesis protein.
  
     0.775
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.