STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_13808ABC-type polar amino acid transport system, ATPase component. (254 aa)    
Predicted Functional Partners:
ATC1_13809
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
  0.998
GAP41846.1
Amino acid ABC transporter membrane protein, PAAT family.
  0.991
ATC1_13316
ABC-type amino acid transport system, permease component.
 0.978
ATC1_1262
Amino acid ABC transporter substrate-binding protein, PAAT family.
 0.976
GAP41188.1
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family.
  0.963
ATC1_13810
ABC-type amino acid transport/signal transduction system, periplasmic component.
 
  0.939
ATC1_13315
Bacterial extracellular solute-binding proteins, family 3.
 
 0.926
ATC1_1114
ABC-type antimicrobial peptide transport system, permease component.
 
      0.900
ATC1_13103
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
     
0.900
GAP41849.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  0.897
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.