STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_13885Protein containing SAF domain. (301 aa)    
Predicted Functional Partners:
ATC1_13883
Pilus assembly protein, ATPase of CpaF family.
 
  
 0.952
ATC1_13884
Flp pilus assembly protein, ATPase CpaE.
  
  
 0.946
ATC1_13886
Protein containing AAA-like domain.
 
     0.911
ATC1_13900
Protein containing DnaA N-terminal domain.
  
     0.775
ATC1_13845
Protein containing helicase conserved C-terminal domain.
  
     0.774
GAP41021.1
Polymer-forming cytoskeletal.
  
     0.765
ATC1_12461
Hypothetical protein.
  
  
 0.756
ATC1_13830
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.749
ATC1_13855
Rad52/22 family double-strand break repair protein.
  
     0.742
ATC1_13862
TadE-like protein.
  
  
 0.723
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.