STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_13924YjzC-like protein. (65 aa)    
Predicted Functional Partners:
ATC1_13675
Hypothetical protein.
   
 
 0.892
ATC1_13922
Hypothetical protein.
       0.748
ATC1_13923
Hypothetical protein.
       0.736
ATC1_13154
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family.
   
  
 0.557
ATC1_13921
Transcriptional regulator, AlpA family.
       0.476
ATC1_13528
Peroxiredoxin, OsmC subfamily.
   
    0.435
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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