STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42913.1Glucose/arabinose dehydrogenase, beta-propeller fold. (466 aa)    
Predicted Functional Partners:
GAP44900.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 
 0.941
GAP43502.1
Ferredoxin subunit of nitrite reductase.
  
 0.871
GAP44728.1
FAD/FMN-containing dehydrogenase.
   
 0.850
GAP44903.1
Protein containing 4Fe-4S dicluster domain.
  
 
 0.832
GAP42548.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 
 0.831
GAP44540.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
   
 
 0.831
TBC1_1142
glycine/D-amino acid oxidase.
    
 0.822
GAP42805.1
Heme/copper-type cytochrome.
  
 0.818
GAP43665.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
  0.812
GAP42636.1
Selenium-dependent xanthine dehydrogenase.
  
 
 0.750
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.