STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42007.1Hypothetical protein. (1141 aa)    
Predicted Functional Partners:
GAP42009.1
Exo-beta-1,3-glucanase, GH17 family.
 
     0.935
GAP42010.1
O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
     0.920
GAP42011.1
Na+/melibiose symporter.
 
     0.906
GAP42005.1
Protein containing bacterial Ig-like domain.
 
  
  0.885
GAP42004.1
Glycosyl hydrolases family 2, TIM barrel domain.
 
     0.880
GAP42012.1
Exo-beta-1,3-glucanase, GH17 family.
 
     0.880
GAP42013.1
Exo-beta-1,3-glucanase, GH17 family.
 
     0.875
GAP42008.1
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
     0.817
GAP42006.1
Glycosyl hydrolases family 16.
 
  
  0.796
GAP42014.1
Protein containing Por secretion system C-terminal sorting domain.
 
  
  0.736
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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