STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43371.1Outer membrane receptor proteins, mostly Fe transport. (803 aa)    
Predicted Functional Partners:
GAP43372.1
Hypothetical protein.
 
     0.813
GAP43374.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.674
GAP43373.1
Signal transduction histidine kinase.
 
     0.667
GAP42286.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.654
GAP44544.1
Protein containing TonB family C-terminal domain; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.577
GAP42789.1
Protein containing TonB family C-terminal domain.
  
   0.560
GAP42025.1
Protein containing TonB family C-terminal domain.
  
   0.536
GAP44734.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.536
GAP44070.1
Protein containing TonB family C-terminal domain; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.517
GAP44864.1
Hypothetical protein.
  
     0.496
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.