STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43519.1pimeloyl-ACP methyl ester carboxylesterase. (266 aa)    
Predicted Functional Partners:
GAP43743.1
acyl-CoA synthetase.
 
 0.976
GAP43739.1
acyl-CoA synthetase.
 
 
 0.888
GAP44900.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 
  0.778
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.661
GAP44619.1
Long-chain acyl-CoA synthetase.
   
 0.650
GAP43144.1
Amidohydrolase, PncC family; Belongs to the CinA family.
    
  0.649
GAP44540.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
  
 
 0.633
GAP42548.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
  
 
 0.632
GAP43159.1
Pyruvate/oxaloacetate carboxyltransferase.
  
 
 0.625
GAP43826.1
Pyruvate/oxaloacetate carboxyltransferase.
  
 
 0.625
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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