STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43600.1DNA-binding transcriptional regulator, XRE-family HTH domain. (76 aa)    
Predicted Functional Partners:
GAP43144.1
Amidohydrolase, PncC family; Belongs to the CinA family.
    
 0.714
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.596
GAP44900.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
  0.593
GAP43599.1
DNA-methyltransferase.
    
 0.581
GAP43601.1
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.563
GAP43598.1
Hypothetical protein.
       0.457
GAP43995.1
Protein containing HipA-like C-terminal domain.
  
 
 0.427
GAP43996.1
Protein containing HipA N-terminal domain.
  
 
 0.427
GAP43743.1
acyl-CoA synthetase.
  
  
 0.403
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.