STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43686.1Histidine kinase. (342 aa)    
Predicted Functional Partners:
GAP43687.1
Two component transcriptional regulator, LytTR family.
 
  0.959
GAP43796.1
Two component transcriptional regulator, LytTR family.
 
  0.830
TBC1_1194
Two component transcriptional regulator, LytTR family.
 
  0.830
GAP43332.1
Two component transcriptional regulator, LytTR family.
  
  0.829
GAP42036.1
Two component transcriptional regulator, LytTR family.
  
  0.829
GAP42902.1
Two component transcriptional regulator, LytTR family.
  
  0.828
GAP44684.1
Two component transcriptional regulator, LytTR family.
  
  0.828
GAP43270.1
Two component transcriptional regulator, LytTR family.
 
  0.827
TBC1_1265
Two component transcriptional regulator, LytTR family.
  
   0.811
TBC1_1270
Two component transcriptional regulator, LytTR family.
  
   0.811
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.