STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43727.1Protein containing tetratricopeptide repeat. (608 aa)    
Predicted Functional Partners:
GAP44156.1
Hypothetical protein.
  
   0.794
GAP43933.1
CheY chemotaxis protein.
    
 0.789
GAP44595.1
Hypothetical protein.
  
     0.775
GAP44772.1
Protein containing N-terminal double-transmembrane domain.
  
     0.775
GAP42765.1
Hypothetical protein.
  
     0.774
GAP42838.1
Hypothetical protein.
  
     0.774
GAP43063.1
Protein of unknown function DUF58.
  
    0.771
GAP44834.1
Molecular chaperone, HSP90 family; Molecular chaperone. Has ATPase activity.
   
  0.745
GAP42892.1
Hypothetical protein.
    
  0.718
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.718
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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