STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43763.1DNA-binding transcriptional regulator, MarR family. (150 aa)    
Predicted Functional Partners:
GAP43933.1
CheY chemotaxis protein.
  
  
 0.683
GAP43765.1
Uncharacterized membrane protein.
 
     0.633
GAP43037.1
Transketolase; Belongs to the transketolase family.
   
 
 0.615
GAP42021.1
Hypothetical protein.
     
 0.609
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.596
GAP42109.1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
     
 0.595
GAP43764.1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
  
 0.584
GAP43011.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
 
  
 0.577
GAP43036.1
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
     
 0.570
cysQ
3'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
     
 0.567
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.