STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43872.1AraC-type DNA-binding domain and AraC-containing protein. (273 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.782
GAP44900.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
     
 0.770
GAP44155.1
Adenylate cyclase, class 3.
   
 
 0.696
GAP42090.1
Malic enzyme.
   
 
 0.681
GAP43743.1
acyl-CoA synthetase.
     
 0.667
GAP42444.1
DNA-binding transcriptional regulator, LacI/PurR family.
 
 
 0.657
GAP44039.1
Adenylate cyclase, class 3.
   
 
 0.600
GAP42995.1
AraC-type DNA-binding domain and AraC-containing protein.
  
     0.575
GAP43933.1
CheY chemotaxis protein.
   
 
 0.528
GAP42742.1
Protein containing helix-turn-helix domain.
  
  
  0.506
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.