STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43941.1Periplasmic protein. (255 aa)    
Predicted Functional Partners:
GAP43940.1
Capsular exopolysaccharide family.
 0.999
GAP45050.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 0.996
GAP42984.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.942
GAP45048.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.937
GAP43122.1
Chain length determinant protein.
  
 0.698
GAP43123.1
Chain length determinant protein.
  
 0.698
GAP45049.1
Protein containing SLBB domain.
  
  
 
0.637
GAP42417.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.625
GAP43653.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.616
GAP44980.1
Bacterial sugar transferase.
 
 
 0.579
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.