STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44169.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
GAP44170.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.680
GAP43230.1
Opacity protein.
  
     0.622
GAP43141.1
Protein containing LVIVD repeat.
  
     0.601
GAP44808.1
Hypothetical protein.
  
     0.518
GAP44789.1
Hypothetical protein.
  
     0.512
GAP42437.1
Protein containing Y_Y_Y domain.
  
     0.482
GAP42055.1
Sugar kinase of the NBD/HSP70 family.
  
     0.454
GAP44171.1
Hypothetical protein.
       0.447
GAP44172.1
Fructosamine-3-kinase.
       0.436
GAP42017.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.