STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44193.1Predicted dehydrogenase. (465 aa)    
Predicted Functional Partners:
GAP42469.1
Sugar phosphate isomerase.
 
 
 0.888
GAP44412.1
Ser/Thr protein kinase RdoA.
 
     0.683
GAP44792.1
Protein containing BNR repeat-like domain.
 
     0.682
GAP44411.1
N-acetyl-beta-hexosaminidase.
  
     0.661
GAP44790.1
alpha-L-fucosidase.
  
     0.656
GAP42470.1
Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.647
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.622
lysS
lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.586
GAP42471.1
Hypothetical protein.
 
     0.558
GAP43843.1
Uncharacterized conserved protein YbjT.
   
 
  0.531
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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