STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42125.1Multidrug resistance efflux pump. (344 aa)    
Predicted Functional Partners:
GAP42123.1
ABC-type multidrug transport system, permease component.
  
 0.936
GAP42124.1
ABC-type multidrug transport system, permease component.
  
 0.934
GAP42126.1
Outer membrane protein TolC.
 
  0.906
GAP42154.1
Heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.701
TBC1_1199
Outer membrane protein TolC.
  
  0.629
GAP43550.1
Outer membrane protein TolC.
  
  0.620
GAP43330.1
Outer membrane protein TolC.
  
  0.603
GAP42122.1
Outer membrane protein beta-barrel domain.
       0.592
GAP43933.1
CheY chemotaxis protein.
  
  
 0.589
GAP42968.1
Outer membrane protein TolC.
  
  0.586
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.