STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42131.1Uncharacterized conserved protein, DUF169 family. (256 aa)    
Predicted Functional Partners:
GAP42130.1
RNA polymerase, sigma 54 subunit, RpoN/SigL.
       0.625
GAP42132.1
Protease II.
       0.519
GAP43892.1
Cysteate synthase.
  
     0.516
GAP43846.1
Nitroreductase.
  
     0.495
GAP42290.1
Transcriptional regulator, TetR family.
  
     0.433
GAP42133.1
Hypothetical protein.
       0.424
GAP44770.1
Rubrerythrin.
  
     0.400
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.