STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42174.1Dipeptide/tripeptide permease. (430 aa)    
Predicted Functional Partners:
GAP43484.1
Peptidase family M28.
 
 
   0.685
GAP42541.1
POT family.
  
     0.677
GAP44010.1
IgA Peptidase M64.
  
     0.664
GAP44049.1
DNA alkylation repair enzyme.
  
     0.577
GAP42175.1
Aspartate kinase; Belongs to the aspartokinase family.
   
   0.552
GAP42968.1
Outer membrane protein TolC.
  
     0.497
TBC1_1188
Oligoendopeptidase F.
 
   
 0.495
TBC1_119
Putative oligopeptide transporter, OPT family.
 
   
 0.494
GAP43282.1
Dipeptidase.
  
     0.483
GAP44065.1
Protein containing lamin tail domain.
  
     0.440
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.