STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42182.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
GAP43743.1
acyl-CoA synthetase.
   
 0.920
GAP43028.1
Hypothetical protein.
  
 
 
 0.808
rplF
Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.716
GAP42144.1
SusD family.
  
 
 
 0.716
GAP44449.1
acyl-CoA synthetase.
  
 
  0.715
GAP43725.1
AMP-binding enzyme.
  
 
  0.714
GAP43739.1
acyl-CoA synthetase.
   
 0.713
GAP44619.1
Long-chain acyl-CoA synthetase.
  
 0.704
GAP43465.1
acyl-CoA synthetase.
    
  0.674
GAP42183.1
Ribosomal protein S18 acetylase RimI.
       0.598
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.