STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42228.1Transcriptional regulator, TetR family. (201 aa)    
Predicted Functional Partners:
GAP42227.1
Hypothetical protein.
       0.791
GAP42224.1
ABC-type transport system.
 
     0.781
GAP42225.1
ABC-type transport system.
 
     0.778
GAP42226.1
ABC-type lipoprotein export system, ATPase component.
   
   0.759
GAP43743.1
acyl-CoA synthetase.
     
 0.633
GAP42223.1
Sigma E regulatory protein, MucB/RseB.
 
     0.589
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.