STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42308.1Nitroreductase. (198 aa)    
Predicted Functional Partners:
GAP42307.1
Peptidase family M28.
  
    0.728
GAP42306.1
Dihydrofolate reductase.
       0.727
GAP43743.1
acyl-CoA synthetase.
   
 
 0.636
GAP42309.1
Histidine kinase.
       0.618
GAP42310.1
DNA-binding transcriptional response regulator, NtrC family.
       0.618
GAP42281.1
Rhodanese-related sulfurtransferase.
    
  0.617
GAP43739.1
acyl-CoA synthetase.
   
 
 0.428
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.