STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42613.1Uncharacterized conserved protein YyaL, SSP411 family. (670 aa)    
Predicted Functional Partners:
GAP45109.1
Protein containing Por secretion system C-terminal sorting domain.
   
 0.967
GAP43940.1
Capsular exopolysaccharide family.
    
 0.645
GAP45050.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
    
 0.645
GAP42984.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
  0.643
GAP45048.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
  0.643
GAP43324.1
Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03.
  
  
  0.621
GAP43579.1
Protein containing Por secretion system C-terminal sorting domain.
    
   0.611
GAP44662.1
Putative esterase.
    
   0.611
GAP42021.1
Hypothetical protein.
    
 0.593
GAP42007.1
Hypothetical protein.
     
 0.567
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.