STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
leuCHomoaconitate hydratase family protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (592 aa)    
Predicted Functional Partners:
GAP44310.1
Homoaconitate hydratase family protein.
 
0.998
GAP44312.1
Isocitrate/isopropylmalate dehydrogenase.
 0.998
GAP44112.1
hMGL-like.
  
 
 0.981
GAP44124.1
hMGL-like.
  
 
 0.981
GAP44900.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 0.951
TBC1_1142
glycine/D-amino acid oxidase.
 
 
 0.933
GAP43159.1
Pyruvate/oxaloacetate carboxyltransferase.
  
 
 0.885
GAP43826.1
Pyruvate/oxaloacetate carboxyltransferase.
  
 
 0.885
GAP42637.1
Threonine synthase.
 
  
 0.882
GAP42090.1
Malic enzyme.
  
 
 0.872
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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