STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42750.1Protein containing Por secretion system C-terminal sorting domain. (1301 aa)    
Predicted Functional Partners:
GAP42747.1
Subtilase family.
  
  0.758
GAP42614.1
Serine protease, subtilisin family.
  
 
0.699
GAP43575.1
Protein containing repeat domain.
  
  0.683
GAP44606.1
Hypothetical protein.
  
     0.678
GAP45161.1
Hypothetical protein.
  
     0.656
GAP42749.1
Protein containing MAM domain.
 
     0.648
GAP44757.1
Hypothetical protein.
  
     0.619
GAP43081.1
Protein containing Por secretion system C-terminal sorting domain.
  
     0.567
GAP43556.1
Protein containing PPIC-type PPIASE domain.
  
     0.562
TBC1_1125
Protein containing lamin tail domain.
  
     0.556
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.