STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42777.1Protein containing Por secretion system C-terminal sorting domain. (957 aa)    
Predicted Functional Partners:
GAP44722.1
Protein containing Por secretion system C-terminal sorting domain.
  
     0.773
GAP43123.1
Chain length determinant protein.
  
     0.759
GAP45171.1
Protein containing Por secretion system C-terminal sorting domain.
  
     0.722
GAP43827.1
Outer membrane protein Omp28.
  
     0.672
GAP42893.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.660
GAP43500.1
TonB dependent receptor.
  
     0.638
GAP43559.1
Protein containing C-terminal domain of CHU protein family.
  
     0.631
GAP43097.1
Protein containing Por secretion system C-terminal sorting domain.
  
     0.618
GAP43828.1
Hypothetical protein.
  
     0.613
GAP42776.1
Protein containing Por secretion system C-terminal sorting domain.
       0.603
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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