STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP42784.1Protein containing tetratricopeptide repeat. (229 aa)    
Predicted Functional Partners:
GAP42783.1
Mg-chelatase subunit ChlD.
     0.994
GAP42782.1
Mg-chelatase subunit ChlD.
     0.981
GAP42785.1
Oxygen tolerance.
   0.925
GAP42781.1
Hypothetical protein.
 
     0.922
GAP42780.1
Protein of unknown function DUF58.
 
    0.901
GAP42786.1
Protein containing bacterial SH3 domain and TPR repeat.
 
     0.892
GAP43933.1
CheY chemotaxis protein.
    
 0.789
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
 
  0.753
GAP44834.1
Molecular chaperone, HSP90 family; Molecular chaperone. Has ATPase activity.
   
  0.745
GAP42892.1
Hypothetical protein.
    
  0.718
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.