STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44318.1Glyoxylase. (287 aa)    
Predicted Functional Partners:
GAP42281.1
Rhodanese-related sulfurtransferase.
  
 0.759
GAP43743.1
acyl-CoA synthetase.
   
 
 0.686
GAP44728.1
FAD/FMN-containing dehydrogenase.
    
 0.622
GAP43739.1
acyl-CoA synthetase.
   
 
 0.453
GAP42935.1
protein-S-isoprenylcysteine O-methyltransferase Ste14.
  
     0.449
ybeY
Probable rRNA maturation factor YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
 
 0.434
GAP42930.1
Rhodanese-related sulfurtransferase.
   
  0.410
GAP42280.1
Rhodanese-related sulfurtransferase.
   
  0.410
GAP44379.1
Rhodanese-related sulfurtransferase.
   
  0.410
GAP44677.1
Rhodanese-related sulfurtransferase.
   
  0.410
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.