STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44333.1Haloacid dehalogenase superfamily, subfamily IA, variant 3. (1078 aa)    
Predicted Functional Partners:
GAP44327.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3.
 
0.963
GAP45103.1
Glycosidase.
 
 
 0.850
GAP44598.1
Alpha-glucan phosphorylases.
  
 
 0.836
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.801
GAP42023.1
Glycosidase.
 
 
 0.792
GAP44334.1
Uridine kinase.
 
 
  0.790
GAP44884.1
Glycosidase.
 
 
 0.786
GAP44324.1
1,4-alpha-glucan branching enzyme.
 
 
 0.784
GAP45105.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.783
GAP43293.1
Glycosidase.
 
 
 0.779
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.