STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44684.1Two component transcriptional regulator, LytTR family. (251 aa)    
Predicted Functional Partners:
GAP44685.1
Protein containing PAS domain S-box.
 
   0.874
GAP42287.1
Protein containing Y_Y_Y domain.
  
  0.872
GAP42901.1
Histidine kinase.
 
  0.846
GAP43331.1
Histidine kinase.
 
  0.846
GAP42037.1
Histidine kinase.
 
  0.846
GAP43795.1
Histidine kinase.
  
  0.829
GAP42977.1
Histidine kinase.
  
  0.828
GAP43271.1
Histidine kinase.
  
  0.828
GAP43686.1
Histidine kinase.
  
  0.828
TBC1_1195
Histidine kinase.
  
  0.828
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.