STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44789.1Hypothetical protein. (531 aa)    
Predicted Functional Partners:
GAP42614.1
Serine protease, subtilisin family.
  
  0.699
GAP42747.1
Subtilase family.
  
  0.699
GAP43575.1
Protein containing repeat domain.
  
  0.683
GAP43128.1
Protein containing cAMP-binding domain of CRP.
  
     0.558
GAP44152.1
GDSL-like lipase.
  
 
   0.556
GAP45109.1
Protein containing Por secretion system C-terminal sorting domain.
  
 
  0.549
GAP43215.1
Hypothetical protein.
  
     0.522
GAP44169.1
Hypothetical protein.
  
     0.512
GAP44151.1
GDSL-like lipase.
  
 
   0.480
GAP43743.1
acyl-CoA synthetase.
  
 
 0.464
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.