STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1_1267Protein containing Por secretion system C-terminal sorting domain. (596 aa)    
Predicted Functional Partners:
GAP43575.1
Protein containing repeat domain.
 
  0.724
GAP42614.1
Serine protease, subtilisin family.
  
  0.699
GAP42747.1
Subtilase family.
  
  0.699
TBC1_1266
Protein containing Por secretion system C-terminal sorting domain.
 
    
0.610
GAP43008.1
Protein containing Por secretion system C-terminal sorting domain.
  
     0.566
TBC1_1263
Protein containing Por secretion system C-terminal sorting domain.
 
     0.516
GAP42464.1
Protein containing Por secretion system C-terminal sorting domain.
  
     0.502
GAP42004.1
Glycosyl hydrolases family 2, TIM barrel domain.
  
     0.478
GAP44500.1
Hypothetical protein.
  
     0.474
GAP43743.1
acyl-CoA synthetase.
  
 
 0.464
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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