STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44863.1ABC-type dipeptide/oligopeptide/nickel transport system, permease component. (410 aa)    
Predicted Functional Partners:
GAP43932.1
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain; Belongs to the ABC transporter superfamily.
 
 0.997
GAP42560.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.997
GAP44430.1
ABC-type transport system, periplasmic component.
 0.979
TBC1_1197
ABC-type lipoprotein export system, ATPase component.
 
 
    0.885
TBC1_1238
ABC-type lipoprotein export system, ATPase component.
 
 
    0.877
GAP44862.1
TIGR00266 family protein.
       0.686
GAP42312.1
ABC-type lipoprotein export system, ATPase component.
 
 
    0.680
GAP42408.1
ABC-type lipoprotein export system, ATPase component.
 
 
    0.679
GAP42226.1
ABC-type lipoprotein export system, ATPase component.
 
 
    0.587
GAP43773.1
ABC-type lipoprotein export system, ATPase component.
 
 
    0.476
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.