STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44917.1Stage II sporulation protein E. (394 aa)    
Predicted Functional Partners:
GAP43933.1
CheY chemotaxis protein.
  
 
 0.989
GAP44918.1
Protein containing PAS domain.
 
     0.951
GAP45246.1
Signal transduction histidine kinase.
  
 
 0.929
GAP44919.1
Thioredoxin-like [2Fe-2S] ferredoxin.
 
     0.927
GAP42199.1
Protein containing PAS domain S-box.
  
 
 0.919
GAP42692.1
Ser/Thr protein kinase.
 
 0.902
GAP44744.1
Histidine kinase.
  
 
 0.874
GAP45209.1
Protein containing PAS domain S-box.
  
 
 0.829
GAP44344.1
CheY chemotaxis protein.
  
 
 0.818
GAP44471.1
Protein containing PAS domain S-box.
  
 
 0.818
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.