STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rex-2NADH/NAD ratio-sensing transcriptional regulator Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (207 aa)    
Predicted Functional Partners:
GAP44924.1
Protein containing response regulator receiver domain.
 
     0.773
GAP44925.1
Signal transduction histidine kinase.
       0.741
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.694
GAP44927.1
Riboflavin kinase; Belongs to the ribF family.
       0.686
GAP44923.1
Signal transduction histidine kinase.
 
     0.684
GAP44928.1
Phosphoribosyl 1,2-cyclic phosphodiesterase.
  
    0.675
GAP44920.1
NADH:ubiquinone oxidoreductase 24 kD subunit.
      0.651
GAP44922.1
[FeFe] hydrogenase, group A.
     
 0.637
GAP44921.1
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit.
  
    0.545
GAP42159.1
Diaminopimelate decarboxylase.
    
 0.517
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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