STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44939.1Hypothetical protein. (468 aa)    
Predicted Functional Partners:
GAP42088.1
Cell surface protein SprA.
  
 
   0.947
GAP44965.1
Hypothetical protein.
  
   
 0.775
GAP43457.1
Protein containing tetratricopeptide repeat.
  
     0.774
GAP42412.1
Predicted Zn-dependent protease.
  
     0.773
GAP44957.1
Outer membrane protein beta-barrel domain.
  
     0.772
GAP43451.1
Bacteroidetes-specific putative membrane protein.
  
     0.770
dinB
Nucleotidyltransferase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
    
   0.770
GAP44549.1
Hypothetical protein.
  
     0.770
GAP43448.1
Gliding motility-associated protein GldM.
  
     0.768
GAP45011.1
Sulfatase-modifying factor enzyme 1.
  
     0.753
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.