STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP45047.1UDP-N-acetylglucosamine transferase subunit ALG13. (158 aa)    
Predicted Functional Partners:
GAP45046.1
Oligosaccharide biosynthesis protein Alg14 like.
 
  
 0.978
GAP45043.1
Glycosyltransferase.
    
  0.798
GAP45044.1
Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family.
       0.773
GAP45045.1
Bacterial capsule synthesis protein PGA_cap.
       0.773
GAP45042.1
Hypothetical protein.
       0.677
GAP43679.1
Sugar/nucleoside kinase, ribokinase family.
    
  0.617
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
  0.617
GAP42255.1
Sugar/nucleoside kinase, ribokinase family.
    
  0.617
GAP45007.1
Sugar/nucleoside kinase, ribokinase family.
    
  0.617
GAP45041.1
Polysaccharide deacetylase.
       0.611
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.